| 1. Identity statement | |
| Reference Type | Conference Paper (Conference Proceedings) |
| Site | sibgrapi.sid.inpe.br |
| Holder Code | ibi 8JMKD3MGPEW34M/46T9EHH |
| Identifier | 6qtX3pFwXQZG2LgkFdY/UNuEH |
| Repository | sid.inpe.br/sibgrapi@80/2008/07.19.00.24 |
| Last Update | 2008:07.19.00.24.12 (UTC) administrator |
| Metadata Repository | sid.inpe.br/sibgrapi@80/2008/07.19.00.24.13 |
| Metadata Last Update | 2022:06.14.00.13.49 (UTC) administrator |
| DOI | 10.1109/SIBGRAPI.2008.42 |
| Citation Key | LlerenaMaci:2008:ExViRF |
| Title | Exploratory visualization of RFLP-PCR genomic data using Multidimensional Scaling  |
| Format | Printed, On-line. |
| Year | 2008 |
| Access Date | 2024, Apr. 29 |
| Number of Files | 1 |
| Size | 431 KiB |
| 2. Context | |
| Author | 1 Llerena, Soledad espezua 2 Maciel, Carlos Dias |
| Affiliation | 1 student 2 professor |
| Editor | Jung, Cláudio Rosito Walter, Marcelo |
| Conference Name | Brazilian Symposium on Computer Graphics and Image Processing, 21 (SIBGRAPI) |
| Conference Location | Campo Grande, MS, Brazil |
| Date | 12-15 Oct. 2008 |
| Publisher | IEEE Computer Society |
| Publisher City | Los Alamitos |
| Book Title | Proceedings |
| Tertiary Type | Full Paper |
| History (UTC) | 2008-07-19 00:24:13 :: sespezua@sel.eesc.usp.br -> administrator :: 2009-08-13 20:38:59 :: administrator -> sespezua@sel.eesc.usp.br :: 2010-08-28 20:03:23 :: sespezua@sel.eesc.usp.br -> administrator :: 2022-06-14 00:13:49 :: administrator -> :: 2008 |
| 3. Content and structure | |
| Is the master or a copy? | is the master |
| Content Stage | completed |
| Transferable | 1 |
| Version Type | finaldraft |
| Keywords | data visualization multidimensional scaling LMDS dimensional reduction RFLP-PCR |
| Abstract | Gel electrophoresis images are common results of biomolecular techniques such as RFLP-PCR (Restriction Fragment Length Polymorphism - Polymerase Chain Reaction). These images are used to discover the genetic relations between organisms. Find patterns in these images are a complex and delayed work if it is performed by humans. Traditionally, the analysis of gel electrophoresis images has been done by biologist using dendrogram representations aiming to capture the relations between organisms in a hierarchical organization. However this representation may be hard to analyze, especially when the information becomes large. This highlights the need to seek new ways of representing this type of data that become more intuitive. One of that methods is MDS (Multidimensional Scaling) which is a method used to transform measurements of similarity (or dissimilarity) between pairs of objects into points in a low-dimensional space, allowing visualize the data in a form that makes it easier to interpret. This paper proposes a new procedure to represent RFLP-PCR images as points in a low-dimensional space, based in a MDS technique. The procedure was applied in a genomic dataset obtained from a Brazilian collection of N2-fixing bacterial strains belonging to the genus Bradyrhizobium. The results showed the efficacy of the procedure to represent the RFLP-PCR images, facilitating the identification of patterns in a more intuitive way than dendrogram's representations. Also, our procedure allows an appropriate integration with a pattern-recognition algorithm, taking advantages of the visual human skills and the computational power. |
| Arrangement 1 | urlib.net > SDLA > Fonds > SIBGRAPI 2008 > Exploratory visualization of... |
| Arrangement 2 | urlib.net > SDLA > Fonds > Full Index > Exploratory visualization of... |
| doc Directory Content | access |
| source Directory Content | there are no files |
| agreement Directory Content | there are no files |
| 4. Conditions of access and use | |
| data URL | http://urlib.net/ibi/6qtX3pFwXQZG2LgkFdY/UNuEH |
| zipped data URL | http://urlib.net/zip/6qtX3pFwXQZG2LgkFdY/UNuEH |
| Language | en |
| Target File | espezua-MDS.pdf |
| User Group | sespezua@sel.eesc.usp.br administrator |
| Visibility | shown |
| 5. Allied materials | |
| Mirror Repository | sid.inpe.br/banon/2001/03.30.15.38.24 |
| Next Higher Units | 8JMKD3MGPEW34M/46SG4TH 8JMKD3MGPEW34M/4742MCS |
| Citing Item List | sid.inpe.br/sibgrapi/2022/05.14.04.55 1 |
| Host Collection | sid.inpe.br/banon/2001/03.30.15.38 |
| 6. Notes | |
| Empty Fields | archivingpolicy archivist area callnumber contenttype copyholder copyright creatorhistory descriptionlevel dissemination documentstage e-mailaddress edition electronicmailaddress group isbn issn label lineage mark nextedition notes numberofvolumes orcid organization pages parameterlist parentrepositories previousedition previouslowerunit progress project readergroup readpermission resumeid rightsholder schedulinginformation secondarydate secondarykey secondarymark secondarytype serieseditor session shorttitle sponsor subject tertiarymark type url volume |